Protein ZmPHD13
ZmPHD13 is a protein in the PHD family.
Information
Coreg Name: ZmPHD13
Species: Maize
Coreg Family: PHD
Gene Name(Synonym): PHD13
Uniprot ID: B6SV09

Protein ZmPHD13

ZmPHD13 is a protein in the PHD family.

Overview of domains present in v5 transcripts
PF00628
Zm00001eb174450_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d049736DAPseq no logo sequence fimo position
Zm00001d049736DAPseq no logo sequence fimo position
Zm00001d049736ChIPseq no logo sequence fimo position
Zm00001d049736PChIPseq no logo sequence fimo position

Interactions where ZmPHD13 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmPHD13 is the target  
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There are 37 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb174450_T001 from maize genome v5

Amino Acid Sequence
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MASDGAPRGRRPKRPASGGLVQPDVLTYKRRRRGTGANAGHSAVTSGPDPDPVKNQMSAVVHATNSQQGGRQTLDRHWRS
WRDTLEGVLRSTAVNQSAGGIQNCIRDALRYNGWHPTEHGNLVDDRGTDEEDATGALHSEESSGALVKLEDGTVASLEAN
KAMCHDTLFDILISEKFAMLCDLLAATFHGSKPDDVIGLQIIDAKMRNGDYAQNPALFDHDIKQIWKKFEHVGQEMAGLA
SSLLLISQASNQKQASDISEIDVAEHKIEETSLVGVTRKALRKFTPPCDSGYSTIPRRTGTSGSDGICKDCGRKADSKGR
IICDRCEAAYHVSCLKLAIDEEAPAKWYCPTCVEPDVPLKSNNHGRAHEGCDVCEWLEVEKPEEPAEEPELAVKTQESSV
SSIVEDSEPDLSITALANLCKLCGTCEDENKKFVVCGHGYCSFKFYHALCLKESQIASEKQRNLKCWYCPSCLCRRCFKN
KDDEKIVLCDGCDEAYHTYCMDPPRSSVPRGKWFCTPCSAWRSANGMQRYEKSILQSVKRVPDAKGPKVQAAAAAPGK

MASDGAPRGRRPKRPASGGLVQPDVLTYKRRRRGTGANAGHSAVTSGPDPDPVKNQMSAVVHATNSQQGGRQTLDRHWRS
WRDTLEGVLRSTAVNQSAGGIQNCIRDALRYNGWHPTEHGNLVDDRGTDEEDATGALHSEESSGALVKLEDGTVASLEAN
KAMCHDTLFDILISEKFAMLCDLLAATFHGSKPDDVIGLQIIDAKMRNGDYAQNPALFDHDIKQIWKKFEHVGQEMAGLA
SSLLLISQASNQKQASDISEIDVAEHKIEETSLVGVTRKALRKFTPPCDSGYSTIPRRTGTSGSDGICKDCGRKADSKGR
IICDRCEAAYHVSCLKLAIDEEAPAKWYCPTCVEPDVPLKSNNHGRAHEGCDVCEWLEVEKPEEPAEEPELAVKTQESSV
SSIVEDSEPDLSITALANLCKLCGTCEDENKKFVVCGHGYCSFKFYHALCLKESQIASEKQRNLKCWYCPSCLCRRCFKN
KDDEKIVLCDGCDEAYHTYCMDPPRSSVPRGKWFCTPCSAWRSANGMQRYEKSILQSVKRVPDAKGPKVQAAAAAPGK

MASDGAPRGRRPKRPASGGLVQPDVLTYKRRRRGTGANAGHSAVTSGPDPDPVKNQMSAVVHATNSQQGGRQTLDRHWRS
WRDTLEGVLRSTAVNQSAGGIQNCIRDALRYNGWHPTEHGNLVDDRGTDEEDATGALHSEESSGALVKLEDGTVASLEAN
KAMCHDTLFDILISEKFAMLCDLLAATFHGSKPDDVIGLQIIDAKMRNGDYAQNPALFDHDIKQIWKKFEHVGQEMAGLA
SSLLLISQASNQKQASDISEIDVAEHKIEETSLVGVTRKALRKFTPPCDSGYSTIPRRTGTSGSDGICKDCGRKADSKGR
IICDRCEAAYHVSCLKLAIDEEAPAKWYCPTCVEPDVPLKSNNHGRAHEGCDVCEWLEVEKPEEPAEEPELAVKTQESSV
SSIVEDSEPDLSITALANLCKLCGTCEDENKKFVVCGHGYCSFKFYHALCLKESQIASEKQRNLKCWYCPSCLCRRCFKN
KDDEKIVLCDGCDEAYHTYCMDPPRSSVPRGKWFCTPCSAWRSANGMQRYEKSILQSVKRVPDAKGPKVQAAAAAPGK

MASDGAPRGRRPKRPASGGLVQPDVLTYKRRRRGTGANAGHSAVTSGPDPDPVKNQMSAVVHATNSQQGGRQTLDRHWRS
WRDTLEGVLRSTAVNQSAGGIQNCIRDALRYNGWHPTEHGNLVDDRGTDEEDATGALHSEESSGALVKLEDGTVASLEAN
KAMCHDTLFDILISEKFAMLCDLLAATFHGSKPDDVIGLQIIDAKMRNGDYAQNPALFDHDIKQIWKKFEHVGQEMAGLA
SSLLLISQASNQKQASDISEIDVAEHKIEETSLVGVTRKALRKFTPPCDSGYSTIPRRTGTSGSDGICKDCGRKADSKGR
IICDRCEAAYHVSCLKLAIDEEAPAKWYCPTCVEPDVPLKSNNHGRAHEGCDVCEWLEVEKPEEPAEEPELAVKTQESSV
SSIVEDSEPDLSITALANLCKLCGTCEDENKKFVVCGHGYCSFKFYHALCLKESQIASEKQRNLKCWYCPSCLCRRCFKN
KDDEKIVLCDGCDEAYHTYCMDPPRSSVPRGKWFCTPCSAWRSANGMQRYEKSILQSVKRVPDAKGPKVQAAAAAPGK

MASDGAPRGRRPKRPASGGLVQPDVLTYKRRRRGTGANAGHSAVTSGPDPDPVKNQMSAVVHATNSQQGGRQTLDRHWRS
WRDTLEGVLRSTAVNQSAGGIQNCIRDALRYNGWHPTEHGNLVDDRGTDEEDATGALHSEESSGALVKLEDGTVASLEAN
KAMCHDTLFDILISEKFAMLCDLLAATFHGSKPDDVIGLQIIDAKMRNGDYAQNPALFDHDIKQIWKKFEHVGQEMAGLA
SSLLLISQASNQKQASDISEIDVAEHKIEETSLVGVTRKALRKFTPPCDSGYSTIPRRTGTSGSDGICKDCGRKADSKGR
IICDRCEAAYHVSCLKLAIDEEAPAKWYCPTCVEPDVPLKSNNHGRAHEGCDVCEWLEVEKPEEPAEEPELAVKTQESSV
SSIVEDSEPDLSITALANLCKLCGTCEDENKKFVVCGHGYCSFKFYHALCLKESQIASEKQRNLKCWYCPSCLCRRCFKN
KDDEKIVLCDGCDEAYHTYCMDPPRSSVPRGKWFCTPCSAWRSANGMQRYEKSILQSVKRVPDAKGPKVQAAAAAPGK

MASDGAPRGRRPKRPASGGLVQPDVLTYKRRRRGTGANAGHSAVTSGPDPDPVKNQMSAVVHATNSQQGGRQTLDRHWRS
WRDTLEGVLRSTAVNQSAGGIQNCIRDALRYNGWHPTEHGNLVDDRGTDEEDATGALHSEESSGALVKLEDGTVASLEAN
KAMCHDTLFDILISEKFAMLCDLLAATFHGSKPDDVIGLQIIDAKMRNGDYAQNPALFDHDIKQIWKKFEHVGQEMAGLA
SSLLLISQASNQKQASDISEIDVAEHKIEETSLVGVTRKALRKFTPPCDSGYSTIPRRTGTSGSDGICKDCGRKADSKGR
IICDRCEAAYHVSCLKLAIDEEAPAKWYCPTCVEPDVPLKSNNHGRAHEGCDVCEWLEVEKPEEPAEEPELAVKTQESSV
SSIVEDSEPDLSITALANLCKLCGTCEDENKKFVVCGHGYCSFKFYHALCLKESQIASEKQRNLKCWYCPSCLCRRCFKN
KDDEKIVLCDGCDEAYHTYCMDPPRSSVPRGKWFCTPCSAWRSANGMQRYEKSILQSVKRVPDAKGPKVQAAAAAPGK

MASDGAPRGRRPKRPASGGLVQPDVLTYKRRRRGTGANAGHSAVTSGPDPDPVKNQMSAVVHATNSQQGGRQTLDRHWRS
WRDTLEGVLRSTAVNQSAGGIQNCIRDALRYNGWHPTEHGNLVDDRGTDEEDATGALHSEESSGALVKLEDGTVASLEAN
KAMCHDTLFDILISEKFAMLCDLLAATFHGSKPDDVIGLQIIDAKMRNGDYAQNPALFDHDIKQIWKKFEHVGQEMAGLA
SSLLLISQASNQKQASDISEIDVAEHKIEETSLVGVTRKALRKFTPPCDSGYSTIPRRTGTSGSDGICKDCGRKADSKGR
IICDRCEAAYHVSCLKLAIDEEAPAKWYCPTCVEPDVPLKSNNHGRAHEGCDVCEWLEVEKPEEPAEEPELAVKTQESSV
SSIVEDSEPDLSITALANLCKLCGTCEDENKKFVVCGHGYCSFKFYHALCLKESQIASEKQRNLKCWYCPSCLCRRCFKN
KDDEKIVLCDGCDEAYHTYCMDPPRSSVPRGKWFCTPCSAWRSANGMQRYEKSILQSVKRVPDAKGPKVQAAAAAPGK

MASDGAPRGRRPKRPASGGLVQPDVLTYKRRRRGTGANAGHSAVTSGPDPDPVKNQMSAVVHATNSQQGGRQTLDRHWRS
WRDTLEGVLRSTAVNQSAGGIQNCIRDALRYNGWHPTEHGNLVDDRGTDEEDATGALHSEESSGALVKLEDGTVASLEAN
KAMCHDTLFDILISEKFAMLCDLLAATFHGSKPDDVIGLQIIDAKMRNGDYAQNPALFDHDIKQIWKKFEHVGQEMAGLA
SSLLLISQASNQKQASDISEIDVAEHKIEETSLVGVTRKALRKFTPPCDSGYSTIPRRTGTSGSDGICKDCGRKADSKGR
IICDRCEAAYHVSCLKLAIDEEAPAKWYCPTCVEPDVPLKSNNHGRAHEGCDVCEWLEVEKPEEPAEEPELAVKTQESSV
SSIVEDSEPDLSITALANLCKLCGTCEDENKKFVVCGHGYCSFKFYHALCLKESQIASEKQRNLKCWYCPSCLCRRCFKN
KDDEKIVLCDGCDEAYHTYCMDPPRSSVPRGKWFCTPCSAWRSANGMQRYEKSILQSVKRVPDAKGPKVQAAAAAPGK

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF00628
PF00628
PF00628
PF00628
Hover here to show all domains

Nucleotide Sequence
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GTCTAGACAAACCTCACTCTTTCAA...

GRMZM2G059266_T01 from maize genome v3


Related TFome: pUT5954

Amino Acid Sequence
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MASDGAPRGRRPKRPASGGLVQPDVLTYKRRRRGTGANAGHSAVTSGPDPDPVKNQMSAVVHATNSQQGGRQTLDRHWRS
WRDTLEGVLRSTAVNQSAGGIQNCIRDALRYNGWHPTEHGNLVDDRGTDEEDATGALHSEESSGALVKLEDGTVASLEAN
KAMCHDTLFDILISEKFAMLCDLLAATFHGSKPDDVIGLQIIDAKMRNGDYAQNPALFDHDIKQIWKKFEHVGQEMAGLA
SSLLLISQASNQKQASDISEIDVAEHKIEETSLVGVTRKALRKFTPPCDSGYSTIPRRTGTSGSDGICKDCGRKADSKGR
IICDRCEAAYHVSCLKLAIDEEAPAKWYCPTCVEPDVPLKSNNHGRAHEGCDVCEWLEVEKPEEPAEEPELAVKTQESSV
SSIVEDSEPDLSITALANLCKLCGTCEDENKKFVVCGHGYCSFKFYHALCLKESQIASEKQRNLKCWYCPSCLCRRCFKN
KDDEKIVLCDGCDEAYHTYCMDPPRSSVPRGKWFCTPCSAWRSANGMQRYEKSILQSVKRVPDAKGPKVQAAAAAPGK

Nucleotide Sequence
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GCTCCTCCGGTTTGGACAACCGCTT...

Zm00001d049736_T001 from maize genome v4

Amino Acid Sequence
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MASDGAPRGRRPKRPASGGLVQPDVLTYKRRRRGTGANAGHSAVTSGPDPDPVKNQMSAVVHATNSQQGGRQTLDRHWRS
WRDTLEGVLRSTAVNQSAGGIQNCIRDALRYNGWHPTEHGNLVDDRGTDEEDATGALHSEESSGALVKLEDGTVASLEAN
KAMCHDTLFDILISEKFAMLCDLLAATFHGSKPDDVIGLQIIDAKMRNGDYAQNPALFDHDIKQIWKKFEHVGQEMAGLA
SSLLLISQASNQKQASDISEIDVAEHKIEETSLVGVTRKALRKFTPPCDSGYSTIPRRTGTSGSDGICKDCGRKADSKGR
IICDRCEAAYHVSCLKLAIDEEAPAKWYCPTCVEPDVPLKSNNHGRAHEGCDVCEWLEVEKPEEPAEEPELAVKTQESSV
SSIVEDSEPDLSITALANLCKLCGTCEDENKKFVVCGHGYCSFKFYHALCLKESQIASEKQRNLKCWYCPSCLCRRCFKN
KDDEKIVLCDGCDEAYHTYCMDPPRSSVPRGKWFCTPCSAWRSANGMQRYEKSILQSVKRVPDAKGPKVQAAAAAPGK

Nucleotide Sequence
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GTCTAGACAAACCTCACTCTTTCAA...

Zm00001d049736_T002 from maize genome v4

Amino Acid Sequence
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KCVRCRRTRFWLSALVSPAPPVWTTACSGFASSSHPPLVPLRSGVLRLPTKISNFPSNPSPVAASSEGVCITLTD

Nucleotide Sequence
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GAAGTGTGTGCGGTGTCGAAGGACA...

Zm00001d049736_T003 from maize genome v4

Amino Acid Sequence
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MSAVVHATNSQQGGRQTLDRHWRSWRDTLEGVLRSTAVNQSAGGIQNCIRDALRYNGWHPTEHGNLVDDRGTDEEDATGA
LHSEESSGALVKLEDGTVASLEANKAMCHDTLFDILISEKFAMLCDLLAATFHGSKPDDVIGLQIIDAKMRNGDYAQNPA
LFDHDIKQIWKKFEHVGQEMAGLASSLLLISQASNQKQASDISEIDVAEHKIEETSLVGVTRKALRKFTPPCDSGYSTIP
RRTGTSGSDGICKDCGRKADSKGRIICDRCEAAYHVSCLKLAIDEEAPAKWYCPTCVEPDVPLKSNNHGRAHEGCDVCEW
LEVEKPEEPAEEPELAVKTQESSVSSIVEDSEPDLSITALANLCKLCGTCEDENKKFVVCGHGYCSFKFYHALCLKESQI
ASEKQRNLKCWYCPSCLCRRCFKNKDDEKIVLCDGCDEAYHTYCMDPPRSSVPRGKWFCTPCSAWRSANGMQRYEKSILQ
SVKRVPDAKGPKVQAAAAAPGK

Nucleotide Sequence
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AGGGTGTCCTGTAATGCTGTCACTC...

Zm00001d049736_T004 from maize genome v4

Amino Acid Sequence
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MSAVVHATNSQQGGRQTLDRHWRSWRDTLEGVLRSTAVNQSAGGIQNCIRDALRYNGWHPTEHGNLVDDRGTDEEDATGA
LHSEESSGALVKLEDGTVASLEANKAMCHDTLFDILISEKFAMLCDLLAATFHGSKPDDVIGLQIIDAKMRNGDYAQNPA
LFDHDIKQIWKKFEHVGQEMAGLASSLLLISQASNQKQASDISEIDVAEHKIEETSLVGVTRKALRKFTPPCDSGYSTIP
RRTGTSGSDGICKDCGRKADSKGRIICDRCEAAYHVSCLKLAIDEEAPAKWYCPTCVEPDVPLKSNNHGRAHEGCDVCEW
LEVEKPEEPAEEPELAVKTQESSVSSIVEDSEPDLSITALANLCKLCGTCEDENKKFVVCGHGYCSFKFYHALCLKESQI
ASEKQRNLKCWYCPSCLCRRCFKNKDDEKIVLCDGCDEAYHTYCMDPPRSSVPRGKWFCTPCSAWRSANGMQRYEKSILQ
SVKRVPDAKGPKVQAAAAAPGK

Nucleotide Sequence
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TTTGGACAACCGCTTGCAGCGGCTT...

Zm00001d049736_T005 from maize genome v4

Amino Acid Sequence
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MSAVVHATNSQQGGRQTLDRHWRSWRDTLEGVLRSTAVNQSAGGIQNCIRDALRYNGWHPTEHGNLVDDRGTDEEDATGA
LHSEESSGALVKLEDGTVASLEANKAMCHDTLFDILISEKFAMLCDLLAATFHGSKPDDVIGLQIIDAKMRNGDYAQNPA
LFDHDIKQIWKKFEHVGQEMAGLASSLLLISQASNQKQASDISEIDVAEHKIEETSLVGVTRKALRKFTPPCDSGYSTIP
RRTGTSGSDGICKDCGRKADSKGRIICDRCEAAYHVSCLKLAIDEEAPAKWYCPTCVEPDVPLKSNNHGRAHEGCDVCEW
LEVEKPEEPAEEPELAVKTQESSVSSIVEDSEPDLSITALANLCKLCGTCEDENKKFVVCGHGYCSFKFYHALCLKESQI
ASEKQRNLKCWYCPSCLCRRCFKNKDDEKIVLCDGCDEAYHTYCMDPPRSSVPRGKWFCTPCSAWRSANGMQRYEKSILQ
SVKRVPDAKGPKVQAAAAAPGK

Nucleotide Sequence
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GCTAGTTTCCCCCGCTCCTCCGGTT...

Zm00001d049736_T006 from maize genome v4

Amino Acid Sequence
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MAGLASSLLLISQASNQKQASDISEIDVAEHKIEETSLVGVTRKALRKFTPPCDSGYSTIPRRTGTSGSDGICKDCGRKA
DSKGRIICDRCEAAYHVSCLKLAIDEEAPAKWYCPTCVEPDVPLKSNNHGRAHEGCDVCEWLEVEKPEEPAEEPELAVKT
QESSVSSIVEDSEPDLSITALANLCKLCGTCEDENKKFVVCGHGYCSFKFYHALCLKESQIASEKQRNLKCWYCPSCLCR
RCFKNKDDEKIVLCDGCDEAYHTYCMDPPRSSVPRGKWFCTPCSAWRSANGMQRYEKSILQSVKRVPDAKGPKVQAAAAA
PGK

Nucleotide Sequence
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GGCTCTCGGCGCTAGTTTCCCCCGC...

Zm00001d049736_T007 from maize genome v4

Amino Acid Sequence
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MSAVVHATNSQQGGRQTLDRHWRSWRDTLEGVLRSTAVNQSAGGIQNCIRDALRYNGWHPTEHGNLVDDRGTDEEDATGA
LHSEESSGALVKLEDGTVASLEANKAMCHDTLFDILISEKFAMLCDLLAATFHGSKPDDVIGLQIIDAKMRNGDYAQNPA
LFDHDIKQIWKKFEHVGQEMAGLASSLLLISQASNQKQASDISEIDVAEHKIEVSGML

Nucleotide Sequence
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CCCTCCCCTCGTCCCTCTCCGCTCC...

Zm00001d049736_T008 from maize genome v4

Amino Acid Sequence
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MSAVVHATNSQQGGRQTLDRHWRSWRDTLEGVLRSTAVNQSAGGIQNCIRDALRYNGWHPTEHGNLVDDRGTDEEDATGA
LHSEESSGALVKLEDGTVASLEANKAMCHDTLFDILISEKFAMLCDLLAATFHGSKPDDVIGLQIIDAKMRNGDYAQNPA
LFDHDIKQIWKKFEHVGQEMAGLASSLLLISQASNQKQVT

Nucleotide Sequence
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TTTGGACAACCGCTTGCAGCGGCTT...


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